IL_5FDV_044

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5FDV|1|1A|A|1134

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_044 not in the Motif Atlas

Homologous match to IL_7RQB_044

Geometric discrepancy: 0.312

The information below is about IL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDV|1|1A|G|1133
5FDV|1|1A|A|1134
5FDV|1|1A|G|1135
5FDV|1|1A|U|1136
5FDV|1|1A|G|1137
*
5FDV|1|1A|C|1146
5FDV|1|1A|U|1147
5FDV|1|1A|C|1148

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1Q

50S ribosomal protein L16