IL_5FDV_090

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_090 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.0537

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

5FDV|1|1A|C|2362
5FDV|1|1A|G|2363
5FDV|1|1A|A|2364
5FDV|1|1A|G|2365
*
5FDV|1|1A|C|2376
5FDV|1|1A|G|2377
5FDV|1|1A|A|2378
5FDV|1|1A|G|2379

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 18

50S ribosomal protein L35