IL_5FDV_099

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

5FDV|1|1A|A|2584, 5FDV|1|1A|C|2585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_099 not in the Motif Atlas

Homologous match to IL_7RQB_098

Geometric discrepancy: 0.0486

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

5FDV|1|1A|C|2524
5FDV|1|1A|G|2525
*
5FDV|1|1A|C|2583
5FDV|1|1A|A|2584
5FDV|1|1A|C|2585
5FDV|1|1A|G|2586

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13

Chain 1y

Pyrrhocoricin