IL_5FDV_100
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UG*CAAG
- Length
- 6 nucleotides
- Bulged bases
- 5FDV|1|1A|A|2554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FDV_100 not in the Motif Atlas
- Homologous match to IL_7RQB_099
- Geometric discrepancy: 0.0486
- The information below is about IL_7RQB_099
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform
- Motif group
- IL_95601.3
- Basepair signature
- cWW-tSH-cWW
- Number of instances in this motif group
- 10
Unit IDs
5FDV|1|1A|U|2534
5FDV|1|1A|G|2535
*
5FDV|1|1A|C|2552
5FDV|1|1A|A|2553
5FDV|1|1A|A|2554
5FDV|1|1A|G|2555
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1N
- 50S ribosomal protein L13
Coloring options: