IL_5FDV_152

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

5FDV|1|1a|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_152 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.0938

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

5FDV|1|1a|G|925
5FDV|1|1a|G|926
5FDV|1|1a|G|927
*
5FDV|1|1a|U|1390
5FDV|1|1a|U|1391

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1x

Ribosome-associated inhibitor A