IL_5FDV_214

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

5FDV|1|2A|U|1142, 5FDV|1|2A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_214 not in the Motif Atlas

Geometric match to IL_7RQB_039

Geometric discrepancy: 0.0496

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5FDV|1|2A|C|1018
5FDV|1|2A|U|1019
5FDV|1|2A|A|1020
5FDV|1|2A|A|1021
5FDV|1|2A|G|1022
5FDV|1|2A|U|1023
5FDV|1|2A|G|1024
*
5FDV|1|2A|C|1140
5FDV|1|2A|U|1141
5FDV|1|2A|U|1142
5FDV|1|2A|A|1142|||A
5FDV|1|2A|A|1143
5FDV|1|2A|G|1144

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13