IL_5FDV_220

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

5FDV|1|2A|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_220 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.0671

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5FDV|1|2A|C|1202
5FDV|1|2A|G|1203
5FDV|1|2A|A|1204
5FDV|1|2A|U|1205
5FDV|1|2A|G|1206
*
5FDV|1|2A|U|1240
5FDV|1|2A|A|1241
5FDV|1|2A|A|1242
5FDV|1|2A|G|1243

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15