IL_5FDV_264

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGUGAACC*GGGGGAG

Length

16 nucleotides

Bulged bases

5FDV|1|2A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDV|1|2A|C|2129
5FDV|1|2A|U|2130
5FDV|1|2A|G|2131
5FDV|1|2A|U|2132
5FDV|1|2A|G|2133
5FDV|1|2A|A|2134
5FDV|1|2A|A|2135
5FDV|1|2A|C|2136
5FDV|1|2A|C|2137
*
5FDV|1|2A|G|2153
5FDV|1|2A|G|2154
5FDV|1|2A|G|2155
5FDV|1|2A|G|2156
5FDV|1|2A|G|2157
5FDV|1|2A|A|2158
5FDV|1|2A|G|2159

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains