IL_5FDV_276

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5FDV|1|2A|G|2576, 5FDV|1|2A|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_276 not in the Motif Atlas

Homologous match to IL_7RQB_097

Geometric discrepancy: 0.0393

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

5FDV|1|2A|C|2510
5FDV|1|2A|U|2511
5FDV|1|2A|C|2512
*
5FDV|1|2A|G|2574
5FDV|1|2A|C|2575
5FDV|1|2A|G|2576
5FDV|1|2A|A|2577
5FDV|1|2A|G|2578

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2y

Pyrrhocoricin