IL_5FDV_293
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FDV_293 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.0473
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5FDV|1|2B|C|71
5FDV|1|2B|G|72
5FDV|1|2B|A|73
5FDV|1|2B|U|74
5FDV|1|2B|G|75
5FDV|1|2B|G|76
5FDV|1|2B|U|77
5FDV|1|2B|A|78
5FDV|1|2B|C|79
*
5FDV|1|2B|G|98
5FDV|1|2B|G|99
5FDV|1|2B|A|100
5FDV|1|2B|G|101
5FDV|1|2B|A|102
5FDV|1|2B|G|103
5FDV|1|2B|U|104
5FDV|1|2B|A|105
5FDV|1|2B|G|106
Current chains
- Chain 2B
- 5S ribosomal RNA
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2Q
- 50S ribosomal protein L16
- Chain 2Z
- 50S ribosomal protein L25
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