IL_5FDV_337

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

5FDV|1|2a|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_337 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.1161

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

5FDV|1|2a|U|1052
5FDV|1|2a|G|1053
5FDV|1|2a|C|1054
5FDV|1|2a|A|1055
5FDV|1|2a|U|1056
*
5FDV|1|2a|A|1204
5FDV|1|2a|U|1205
5FDV|1|2a|G|1206

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z

Chain 2x

Ribosome-associated inhibitor A