IL_5FDV_359

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_359 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0394

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5FDV|1|1A|G|1713
5FDV|1|1A|G|1714
5FDV|1|1A|A|1715
5FDV|1|1A|A|1716
5FDV|1|1A|C|1717
5FDV|1|1A|U|1718
5FDV|1|1A|C|1719
5FDV|1|1A|U|1720
5FDV|1|1A|G|1721
*
5FDV|1|1A|C|2012
5FDV|1|1A|U|2013
5FDV|1|1A|G|2014
5FDV|1|1A|U|2015
5FDV|1|1A|C|2016

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1O

50S ribosomal protein L14