IL_5FDV_364

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGG*CUGA

Length

7 nucleotides

Bulged bases

5FDV|1|1a|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_364 not in the Motif Atlas

Homologous match to IL_6CZR_128

Geometric discrepancy: 0.1763

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5FDV|1|1a|U|375
5FDV|1|1a|G|376
5FDV|1|1a|G|377
*
5FDV|1|1a|C|386
5FDV|1|1a|U|387
5FDV|1|1a|G|388
5FDV|1|1a|A|389

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16