IL_5FDV_365
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAAGAAGC*GUGUAAAC
- Length
- 17 nucleotides
- Bulged bases
- 5FDV|1|1a|A|412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FDV_365 not in the Motif Atlas
- Homologous match to IL_6CZR_129
- Geometric discrepancy: 0.1474
- The information below is about IL_6CZR_129
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58819.1
- Basepair signature
- cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
5FDV|1|1a|G|409
5FDV|1|1a|G|410
5FDV|1|1a|A|411
5FDV|1|1a|A|412
5FDV|1|1a|G|413
5FDV|1|1a|A|414
5FDV|1|1a|A|415
5FDV|1|1a|G|416
5FDV|1|1a|C|417
*
5FDV|1|1a|G|426
5FDV|1|1a|U|427
5FDV|1|1a|G|428
5FDV|1|1a|U|429
5FDV|1|1a|A|430
5FDV|1|1a|A|431
5FDV|1|1a|A|432
5FDV|1|1a|C|433
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
Coloring options: