IL_5FDV_367
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FDV_367 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.0573
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
5FDV|1|1a|G|673
5FDV|1|1a|G|674
5FDV|1|1a|A|675
5FDV|1|1a|A|676
5FDV|1|1a|U|677
*
5FDV|1|1a|G|713
5FDV|1|1a|G|714
5FDV|1|1a|A|715
5FDV|1|1a|A|716
5FDV|1|1a|C|717
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1f
- 30S ribosomal protein S6
- Chain 1k
- 30S ribosomal protein S11
- Chain 1r
- 30S ribosomal protein S18
Coloring options: