IL_5FDV_373

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGG*CUAC

Length

7 nucleotides

Bulged bases

5FDV|1|2A|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_373 not in the Motif Atlas

Geometric match to IL_4V88_507

Geometric discrepancy: 0.2546

The information below is about IL_4V88_507

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5FDV|1|2A|G|880
5FDV|1|2A|G|881
5FDV|1|2A|G|882
*
5FDV|1|2A|C|894
5FDV|1|2A|U|895
5FDV|1|2A|A|896
5FDV|1|2A|C|897

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2Z

50S ribosomal protein L25