IL_5FDV_374
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAACUCUG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FDV_374 not in the Motif Atlas
- Homologous match to IL_9DFE_066
- Geometric discrepancy: 0.0522
- The information below is about IL_9DFE_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
5FDV|1|2A|G|1666
5FDV|1|2A|G|1667
5FDV|1|2A|A|1668
5FDV|1|2A|A|1669
5FDV|1|2A|C|1670
5FDV|1|2A|U|1671
5FDV|1|2A|C|1672
5FDV|1|2A|U|1673
5FDV|1|2A|G|1674
*
5FDV|1|2A|C|1990
5FDV|1|2A|U|1991
5FDV|1|2A|G|1992
5FDV|1|2A|U|1993
5FDV|1|2A|C|1994
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 2E
- 50S ribosomal protein L3
- Chain 2O
- 50S ribosomal protein L14
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