IL_5FL8_046

3D structure

PDB id

5FL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AUUGCGAUGGUC*GAUGUUGACGCAAU

Length

26 nucleotides

Bulged bases

5FL8|1|x|U|2159, 5FL8|1|x|U|2175, 5FL8|1|x|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FL8|1|x|A|2152
5FL8|1|x|U|2153
5FL8|1|x|U|2154
5FL8|1|x|G|2155
5FL8|1|x|C|2156
5FL8|1|x|G|2157
5FL8|1|x|A|2158
5FL8|1|x|U|2159
5FL8|1|x|G|2160
5FL8|1|x|G|2161
5FL8|1|x|U|2162
5FL8|1|x|C|2163
*
5FL8|1|x|G|2171
5FL8|1|x|A|2172
5FL8|1|x|U|2173
5FL8|1|x|G|2174
5FL8|1|x|U|2175
5FL8|1|x|U|2176
5FL8|1|x|G|2177
5FL8|1|x|A|2178
5FL8|1|x|C|2179
5FL8|1|x|G|2180
5FL8|1|x|C|2181
5FL8|1|x|A|2182
5FL8|1|x|A|2183
5FL8|1|x|U|2184

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L43-A

Chain r

Protein SDA1