IL_5FL8_059

3D structure

PDB id

5FL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UGC*GCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGC,GCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FL8_059 not in the Motif Atlas

Geometric match to IL_7A0S_020

Geometric discrepancy: 0.1588

The information below is about IL_7A0S_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5FL8|1|z|U|4
5FL8|1|z|G|5
5FL8|1|z|C|6
*
5FL8|1|z|G|115
5FL8|1|z|C|116
5FL8|1|z|A|117

Current chains

Chain z

5S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain J

60S ribosomal protein L11-A

Chain x

Large subunit ribosomal RNA; LSU rRNA