IL_5FL8_071
3D structure
- PDB id
- 5FL8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGGGUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUU*GUGGACAUUUGAAUGAAG
- Length
- 113 nucleotides
- Bulged bases
- 5FL8|1|x|U|979, 5FL8|1|x|A|980, 5FL8|1|x|G|984, 5FL8|1|x|U|990, 5FL8|1|x|G|1001, 5FL8|1|x|A|1002, 5FL8|1|x|A|1006, 5FL8|1|x|U|1007, 5FL8|1|x|A|1025, 5FL8|1|x|A|1065, 5FL8|1|x|A|1093, 5FL8|1|x|U|1094, 5FL8|1|x|U|1095, 5FL8|1|x|A|1103
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5FL8|1|x|C|977
5FL8|1|x|G|978
5FL8|1|x|U|979
5FL8|1|x|A|980
5FL8|1|x|U|981
5FL8|1|x|C|982
5FL8|1|x|A|983
5FL8|1|x|G|984
5FL8|1|x|U|985
5FL8|1|x|U|986
5FL8|1|x|U|987
5FL8|1|x|U|988
5FL8|1|x|A|989
5FL8|1|x|U|990
5FL8|1|x|G|991
5FL8|1|x|A|992
5FL8|1|x|G|993
5FL8|1|x|G|994
5FL8|1|x|U|995
5FL8|1|x|A|996
5FL8|1|x|A|997
5FL8|1|x|A|998
5FL8|1|x|G|999
5FL8|1|x|C|1000
5FL8|1|x|G|1001
5FL8|1|x|A|1002
5FL8|1|x|A|1003
5FL8|1|x|U|1004
5FL8|1|x|G|1005
5FL8|1|x|A|1006
5FL8|1|x|U|1007
5FL8|1|x|U|1008
5FL8|1|x|A|1009
5FL8|1|x|G|1010
5FL8|1|x|A|1011
5FL8|1|x|G|1012
5FL8|1|x|G|1013
5FL8|1|x|U|1014
5FL8|1|x|U|1015
5FL8|1|x|C|1016
5FL8|1|x|C|1017
5FL8|1|x|G|1018
5FL8|1|x|G|1019
5FL8|1|x|G|1020
5FL8|1|x|G|1021
5FL8|1|x|U|1022
5FL8|1|x|C|1023
5FL8|1|x|G|1024
5FL8|1|x|A|1025
5FL8|1|x|A|1026
5FL8|1|x|A|1027
5FL8|1|x|U|1028
5FL8|1|x|G|1029
5FL8|1|x|A|1030
5FL8|1|x|C|1031
5FL8|1|x|C|1032
5FL8|1|x|U|1033
5FL8|1|x|U|1034
5FL8|1|x|G|1035
5FL8|1|x|A|1036
5FL8|1|x|C|1037
5FL8|1|x|C|1038
5FL8|1|x|U|1039
5FL8|1|x|A|1040
5FL8|1|x|U|1041
5FL8|1|x|U|1042
5FL8|1|x|C|1043
5FL8|1|x|U|1044
5FL8|1|x|C|1045
5FL8|1|x|A|1046
5FL8|1|x|A|1047
5FL8|1|x|A|1048
5FL8|1|x|C|1049
5FL8|1|x|U|1050
5FL8|1|x|U|1051
5FL8|1|x|U|1052
5FL8|1|x|A|1053
5FL8|1|x|A|1054
5FL8|1|x|A|1055
5FL8|1|x|U|1056
5FL8|1|x|A|1057
5FL8|1|x|U|1058
5FL8|1|x|G|1059
5FL8|1|x|U|1060
5FL8|1|x|A|1061
5FL8|1|x|A|1062
5FL8|1|x|G|1063
5FL8|1|x|A|1064
5FL8|1|x|A|1065
5FL8|1|x|G|1066
5FL8|1|x|U|1067
5FL8|1|x|C|1068
5FL8|1|x|C|1069
5FL8|1|x|U|1070
5FL8|1|x|U|1071
*
5FL8|1|x|G|1087
5FL8|1|x|U|1088
5FL8|1|x|G|1089
5FL8|1|x|G|1090
5FL8|1|x|A|1091
5FL8|1|x|C|1092
5FL8|1|x|A|1093
5FL8|1|x|U|1094
5FL8|1|x|U|1095
5FL8|1|x|U|1096
5FL8|1|x|G|1097
5FL8|1|x|A|1098
5FL8|1|x|A|1099
5FL8|1|x|U|1100
5FL8|1|x|G|1101
5FL8|1|x|A|1102
5FL8|1|x|A|1103
5FL8|1|x|G|1104
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L7-A
- Chain J
- 60S ribosomal protein L11-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain q
- Ribosome assembly protein 4
- Chain r
- Protein SDA1
- Chain s
- Midasin
- Chain z
- 5S ribosomal RNA; 5S rRNA
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