IL_5FL8_078

3D structure

PDB id

5FL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GAGACGU*GCCCGUGAAAAUC

Length

20 nucleotides

Bulged bases

5FL8|1|x|C|1657, 5FL8|1|x|C|1793, 5FL8|1|x|G|1794, 5FL8|1|x|U|1795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FL8|1|x|G|1653
5FL8|1|x|A|1654
5FL8|1|x|G|1655
5FL8|1|x|A|1656
5FL8|1|x|C|1657
5FL8|1|x|G|1658
5FL8|1|x|U|1659
*
5FL8|1|x|G|1790
5FL8|1|x|C|1791
5FL8|1|x|C|1792
5FL8|1|x|C|1793
5FL8|1|x|G|1794
5FL8|1|x|U|1795
5FL8|1|x|G|1796
5FL8|1|x|A|1797
5FL8|1|x|A|1798
5FL8|1|x|A|1799
5FL8|1|x|A|1800
5FL8|1|x|U|1801
5FL8|1|x|C|1802

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain g

60S ribosomal protein L34-A

Chain p

60S ribosomal protein L43-A