IL_5FL8_083
3D structure
- PDB id
- 5FL8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAAUGAAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGU*GCUGAUCCGGGUUGAAGACAUUGUCAGG
- Length
- 167 nucleotides
- Bulged bases
- 5FL8|1|x|A|2438, 5FL8|1|x|U|2453, 5FL8|1|x|G|2454, 5FL8|1|x|A|2458, 5FL8|1|x|U|2460, 5FL8|1|x|G|2467, 5FL8|1|x|U|2472, 5FL8|1|x|G|2481, 5FL8|1|x|U|2487, 5FL8|1|x|C|2490, 5FL8|1|x|U|2493, 5FL8|1|x|A|2494, 5FL8|1|x|C|2495, 5FL8|1|x|U|2501, 5FL8|1|x|A|2502, 5FL8|1|x|U|2514, 5FL8|1|x|G|2522, 5FL8|1|x|U|2538, 5FL8|1|x|U|2541, 5FL8|1|x|U|2542, 5FL8|1|x|U|2543, 5FL8|1|x|G|2549, 5FL8|1|x|U|2550, 5FL8|1|x|U|2551, 5FL8|1|x|C|2552, 5FL8|1|x|U|2553, 5FL8|1|x|A|2554, 5FL8|1|x|C|2560, 5FL8|1|x|A|2561, 5FL8|1|x|U|2581, 5FL8|1|x|G|2586
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5FL8|1|x|U|2427
5FL8|1|x|U|2428
5FL8|1|x|G|2429
5FL8|1|x|A|2430
5FL8|1|x|C|2431
5FL8|1|x|A|2432
5FL8|1|x|U|2433
5FL8|1|x|U|2434
5FL8|1|x|G|2435
5FL8|1|x|U|2436
5FL8|1|x|G|2437
5FL8|1|x|A|2438
5FL8|1|x|A|2439
5FL8|1|x|G|2440
5FL8|1|x|A|2441
5FL8|1|x|G|2442
5FL8|1|x|A|2443
5FL8|1|x|C|2444
5FL8|1|x|A|2445
5FL8|1|x|U|2446
5FL8|1|x|A|2447
5FL8|1|x|G|2448
5FL8|1|x|A|2449
5FL8|1|x|G|2450
5FL8|1|x|G|2451
5FL8|1|x|G|2452
5FL8|1|x|U|2453
5FL8|1|x|G|2454
5FL8|1|x|U|2455
5FL8|1|x|A|2456
5FL8|1|x|G|2457
5FL8|1|x|A|2458
5FL8|1|x|A|2459
5FL8|1|x|U|2460
5FL8|1|x|A|2461
5FL8|1|x|A|2462
5FL8|1|x|G|2463
5FL8|1|x|U|2464
5FL8|1|x|G|2465
5FL8|1|x|G|2466
5FL8|1|x|G|2467
5FL8|1|x|A|2468
5FL8|1|x|G|2469
5FL8|1|x|C|2470
5FL8|1|x|U|2471
5FL8|1|x|U|2472
5FL8|1|x|C|2473
5FL8|1|x|G|2474
5FL8|1|x|G|2475
5FL8|1|x|C|2476
5FL8|1|x|G|2477
5FL8|1|x|C|2478
5FL8|1|x|C|2479
5FL8|1|x|A|2480
5FL8|1|x|G|2481
5FL8|1|x|U|2482
5FL8|1|x|G|2483
5FL8|1|x|A|2484
5FL8|1|x|A|2485
5FL8|1|x|A|2486
5FL8|1|x|U|2487
5FL8|1|x|A|2488
5FL8|1|x|C|2489
5FL8|1|x|C|2490
5FL8|1|x|A|2491
5FL8|1|x|C|2492
5FL8|1|x|U|2493
5FL8|1|x|A|2494
5FL8|1|x|C|2495
5FL8|1|x|C|2496
5FL8|1|x|U|2497
5FL8|1|x|U|2498
5FL8|1|x|U|2499
5FL8|1|x|A|2500
5FL8|1|x|U|2501
5FL8|1|x|A|2502
5FL8|1|x|G|2503
5FL8|1|x|U|2504
5FL8|1|x|U|2505
5FL8|1|x|U|2506
5FL8|1|x|C|2507
5FL8|1|x|U|2508
5FL8|1|x|U|2509
5FL8|1|x|U|2510
5FL8|1|x|A|2511
5FL8|1|x|C|2512
5FL8|1|x|U|2513
5FL8|1|x|U|2514
5FL8|1|x|A|2515
5FL8|1|x|U|2516
5FL8|1|x|U|2517
5FL8|1|x|C|2518
5FL8|1|x|A|2519
5FL8|1|x|A|2520
5FL8|1|x|U|2521
5FL8|1|x|G|2522
5FL8|1|x|A|2523
5FL8|1|x|A|2524
5FL8|1|x|G|2525
5FL8|1|x|C|2526
5FL8|1|x|G|2527
5FL8|1|x|G|2528
5FL8|1|x|A|2529
5FL8|1|x|G|2530
5FL8|1|x|C|2531
5FL8|1|x|U|2532
5FL8|1|x|G|2533
5FL8|1|x|G|2534
5FL8|1|x|A|2535
5FL8|1|x|A|2536
5FL8|1|x|U|2537
5FL8|1|x|U|2538
5FL8|1|x|C|2539
5FL8|1|x|A|2540
5FL8|1|x|U|2541
5FL8|1|x|U|2542
5FL8|1|x|U|2543
5FL8|1|x|U|2544
5FL8|1|x|C|2545
5FL8|1|x|C|2546
5FL8|1|x|A|2547
5FL8|1|x|C|2548
5FL8|1|x|G|2549
5FL8|1|x|U|2550
5FL8|1|x|U|2551
5FL8|1|x|C|2552
5FL8|1|x|U|2553
5FL8|1|x|A|2554
5FL8|1|x|G|2555
5FL8|1|x|C|2556
5FL8|1|x|A|2557
5FL8|1|x|U|2558
5FL8|1|x|U|2559
5FL8|1|x|C|2560
5FL8|1|x|A|2561
5FL8|1|x|A|2562
5FL8|1|x|G|2563
5FL8|1|x|G|2564
5FL8|1|x|U|2565
*
5FL8|1|x|G|2576
5FL8|1|x|C|2577
5FL8|1|x|U|2578
5FL8|1|x|G|2579
5FL8|1|x|A|2580
5FL8|1|x|U|2581
5FL8|1|x|C|2582
5FL8|1|x|C|2583
5FL8|1|x|G|2584
5FL8|1|x|G|2585
5FL8|1|x|G|2586
5FL8|1|x|U|2587
5FL8|1|x|U|2588
5FL8|1|x|G|2589
5FL8|1|x|A|2590
5FL8|1|x|A|2591
5FL8|1|x|G|2592
5FL8|1|x|A|2593
5FL8|1|x|C|2594
5FL8|1|x|A|2595
5FL8|1|x|U|2596
5FL8|1|x|U|2597
5FL8|1|x|G|2598
5FL8|1|x|U|2599
5FL8|1|x|C|2600
5FL8|1|x|A|2601
5FL8|1|x|G|2602
5FL8|1|x|G|2603
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain I
- 60S ribosomal protein L1-B
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34-A
- Chain i
- 60S ribosomal protein L36-A
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: