IL_5GAD_004

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAD_004 not in the Motif Atlas

Homologous match to IL_5J7L_245

Geometric discrepancy: 0.0679

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5GAD|1|A|G|24
5GAD|1|A|U|25
5GAD|1|A|G|26
5GAD|1|A|G|27
5GAD|1|A|A|28
5GAD|1|A|U|29
5GAD|1|A|G|30
*
5GAD|1|A|C|510
5GAD|1|A|U|511
5GAD|1|A|G|512
5GAD|1|A|A|513
5GAD|1|A|A|514
5GAD|1|A|A|515
5GAD|1|A|C|516

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32