IL_5GAD_007

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

5GAD|1|A|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAD_007 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.0877

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

5GAD|1|A|G|81
5GAD|1|A|U|82
5GAD|1|A|A|83
5GAD|1|A|A|84
5GAD|1|A|G|85
*
5GAD|1|A|C|97
5GAD|1|A|G|98
5GAD|1|A|U|99
5GAD|1|A|U|100
5GAD|1|A|A|101
5GAD|1|A|U|102
5GAD|1|A|A|103
5GAD|1|A|A|104
5GAD|1|A|C|105

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L24

Chain Z

50S ribosomal protein L29