IL_5GAD_016
3D structure
- PDB id
- 5GAD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNC-SRP-SR complex early state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 5GAD|1|A|A|504, 5GAD|1|A|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAD_016 not in the Motif Atlas
- Homologous match to IL_5J7L_255
- Geometric discrepancy: 0.0779
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
5GAD|1|A|G|481
5GAD|1|A|A|482
5GAD|1|A|A|483
5GAD|1|A|C|484
*
5GAD|1|A|G|496
5GAD|1|A|A|497
5GAD|1|A|G|498
5GAD|1|A|U|499
5GAD|1|A|G|500
5GAD|1|A|A|501
5GAD|1|A|A|502
5GAD|1|A|A|503
5GAD|1|A|A|504
5GAD|1|A|A|505
5GAD|1|A|G|506
5GAD|1|A|A|507
5GAD|1|A|A|508
5GAD|1|A|C|509
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain T
- 50S ribosomal protein L22
- Chain V
- 50S ribosomal protein L24
- Chain i
- Signal recognition particle protein Ffh
Coloring options: