IL_5GAD_070

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5GAD|1|A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAD_070 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0916

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5GAD|1|A|C|1686
5GAD|1|A|G|1687
5GAD|1|A|U|1688
5GAD|1|A|A|1689
5GAD|1|A|A|1690
5GAD|1|A|C|1691
*
5GAD|1|A|G|1696
5GAD|1|A|G|1697
5GAD|1|A|A|1698
5GAD|1|A|G|1699
5GAD|1|A|A|1700
5GAD|1|A|A|1701
5GAD|1|A|G|1702

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2