IL_5GAD_073

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

5GAD|1|A|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAD_073 not in the Motif Atlas

Homologous match to IL_7A0S_064

Geometric discrepancy: 0.1155

The information below is about IL_7A0S_064

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

5GAD|1|A|G|1770
5GAD|1|A|C|1771
*
5GAD|1|A|G|1980
5GAD|1|A|A|1981
5GAD|1|A|U|1982

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2