IL_5GAD_080
3D structure
- PDB id
- 5GAD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNC-SRP-SR complex early state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 5GAD|1|A|A|1938, 5GAD|1|A|U|1944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAD_080 not in the Motif Atlas
- Homologous match to IL_7A0S_072
- Geometric discrepancy: 0.1461
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
5GAD|1|A|C|1934
5GAD|1|A|G|1935
5GAD|1|A|A|1936
5GAD|1|A|A|1937
5GAD|1|A|A|1938
5GAD|1|A|U|1939
5GAD|1|A|U|1940
5GAD|1|A|C|1941
5GAD|1|A|C|1942
5GAD|1|A|U|1943
5GAD|1|A|U|1944
5GAD|1|A|G|1945
*
5GAD|1|A|C|1961
5GAD|1|A|C|1962
5GAD|1|A|U|1963
5GAD|1|A|G|1964
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
Coloring options: