IL_5GAD_090

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5GAD|1|A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAD_090 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.5038

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5GAD|1|A|C|2129
5GAD|1|A|U|2130
5GAD|1|A|U|2131
5GAD|1|A|U|2132
5GAD|1|A|G|2133
5GAD|1|A|A|2134
5GAD|1|A|A|2135
5GAD|1|A|G|2136
*
5GAD|1|A|U|2155
5GAD|1|A|G|2156
5GAD|1|A|G|2157
5GAD|1|A|A|2158
5GAD|1|A|G|2159

Current chains

Chain A

23S rRNA

Nearby chains