IL_5GAD_100

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAC*GUGUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAD_100 not in the Motif Atlas

Geometric match to IL_8P9A_467

Geometric discrepancy: 0.3992

The information below is about IL_8P9A_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07469.2

Basepair signature

cWW-tSH-cWW-cSH-R-cWW

Number of instances in this motif group

3

Unit IDs

5GAD|1|A|A|2459
5GAD|1|A|U|2460
5GAD|1|A|A|2461
5GAD|1|A|C|2462
*
5GAD|1|A|G|2488
5GAD|1|A|U|2489
5GAD|1|A|G|2490
5GAD|1|A|U|2491
5GAD|1|A|U|2492
5GAD|1|A|U|2493

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16