IL_5GAD_128

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCCUUGAUGUGUAGGAUAGGUG*CACCCUUUAAUGU

Length

35 nucleotides

Bulged bases

5GAD|1|A|G|2110, 5GAD|1|A|U|2111, 5GAD|1|A|A|2114, 5GAD|1|A|G|2115, 5GAD|1|A|G|2116, 5GAD|1|A|A|2117, 5GAD|1|A|U|2118, 5GAD|1|A|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAD|1|A|G|2102
5GAD|1|A|C|2103
5GAD|1|A|C|2104
5GAD|1|A|U|2105
5GAD|1|A|U|2106
5GAD|1|A|G|2107
5GAD|1|A|A|2108
5GAD|1|A|U|2109
5GAD|1|A|G|2110
5GAD|1|A|U|2111
5GAD|1|A|G|2112
5GAD|1|A|U|2113
5GAD|1|A|A|2114
5GAD|1|A|G|2115
5GAD|1|A|G|2116
5GAD|1|A|A|2117
5GAD|1|A|U|2118
5GAD|1|A|A|2119
5GAD|1|A|G|2120
5GAD|1|A|G|2121
5GAD|1|A|U|2122
5GAD|1|A|G|2123
*
5GAD|1|A|C|2175
5GAD|1|A|A|2176
5GAD|1|A|C|2177
5GAD|1|A|C|2178
5GAD|1|A|C|2179
5GAD|1|A|U|2180
5GAD|1|A|U|2181
5GAD|1|A|U|2182
5GAD|1|A|A|2183
5GAD|1|A|A|2184
5GAD|1|A|U|2185
5GAD|1|A|G|2186
5GAD|1|A|U|2187

Current chains

Chain A

23S rRNA

Nearby chains