IL_5GAD_129

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

5GAD|1|A|A|2126, 5GAD|1|A|C|2161, 5GAD|1|A|C|2164, 5GAD|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAD_129 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.1355

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5GAD|1|A|G|2123
5GAD|1|A|G|2124
5GAD|1|A|G|2125
5GAD|1|A|A|2126
5GAD|1|A|G|2127
5GAD|1|A|G|2128
*
5GAD|1|A|C|2160
5GAD|1|A|C|2161
5GAD|1|A|G|2162
5GAD|1|A|A|2163
5GAD|1|A|C|2164
5GAD|1|A|C|2165
5GAD|1|A|U|2166
5GAD|1|A|U|2167
5GAD|1|A|G|2168
5GAD|1|A|A|2169
5GAD|1|A|A|2170
5GAD|1|A|A|2171
5GAD|1|A|U|2172
5GAD|1|A|A|2173
5GAD|1|A|C|2174
5GAD|1|A|C|2175

Current chains

Chain A

23S rRNA

Nearby chains