IL_5GAF_006

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

5GAF|1|A|U|102

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAF_006 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.0877

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

5GAF|1|A|G|81
5GAF|1|A|U|82
5GAF|1|A|A|83
5GAF|1|A|A|84
5GAF|1|A|G|85
*
5GAF|1|A|C|97
5GAF|1|A|G|98
5GAF|1|A|U|99
5GAF|1|A|U|100
5GAF|1|A|A|101
5GAF|1|A|U|102
5GAF|1|A|A|103
5GAF|1|A|A|104
5GAF|1|A|C|105

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L24

Chain Z

50S ribosomal protein L29