IL_5GAF_023
3D structure
- PDB id
- 5GAF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNC in complex with SRP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAF_023 not in the Motif Atlas
- Geometric match to IL_4WF9_024
- Geometric discrepancy: 0.085
- The information below is about IL_4WF9_024
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
5GAF|1|A|U|703
5GAF|1|A|G|704
5GAF|1|A|A|705
5GAF|1|A|A|706
5GAF|1|A|G|707
*
5GAF|1|A|U|724
5GAF|1|A|G|725
5GAF|1|A|G|726
5GAF|1|A|A|727
5GAF|1|A|G|728
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
Coloring options: