IL_5GAF_035

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGGG*UUACC

Length

9 nucleotides

Bulged bases

5GAF|1|A|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAF_035 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3644

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5GAF|1|A|G|879
5GAF|1|A|G|880
5GAF|1|A|G|881
5GAF|1|A|G|882
*
5GAF|1|A|U|894
5GAF|1|A|U|895
5GAF|1|A|A|896
5GAF|1|A|C|897
5GAF|1|A|C|898

Current chains

Chain A

23S ribosomal RNA

Nearby chains