IL_5GAF_070

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

5GAF|1|A|U|1714

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAF_070 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.0938

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5GAF|1|A|U|1712
5GAF|1|A|A|1713
5GAF|1|A|U|1714
5GAF|1|A|G|1715
5GAF|1|A|U|1716
5GAF|1|A|A|1717
5GAF|1|A|G|1718
*
5GAF|1|A|U|1742
5GAF|1|A|G|1743
5GAF|1|A|A|1744
5GAF|1|A|A|1745
5GAF|1|A|A|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains