IL_5GAF_087

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UGAUGUGUAGGAUAGGUG*CACCCUUUA

Length

27 nucleotides

Bulged bases

5GAF|1|A|U|2111, 5GAF|1|A|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAF|1|A|U|2106
5GAF|1|A|G|2107
5GAF|1|A|A|2108
5GAF|1|A|U|2109
5GAF|1|A|G|2110
5GAF|1|A|U|2111
5GAF|1|A|G|2112
5GAF|1|A|U|2113
5GAF|1|A|A|2114
5GAF|1|A|G|2115
5GAF|1|A|G|2116
5GAF|1|A|A|2117
5GAF|1|A|U|2118
5GAF|1|A|A|2119
5GAF|1|A|G|2120
5GAF|1|A|G|2121
5GAF|1|A|U|2122
5GAF|1|A|G|2123
*
5GAF|1|A|C|2175
5GAF|1|A|A|2176
5GAF|1|A|C|2177
5GAF|1|A|C|2178
5GAF|1|A|C|2179
5GAF|1|A|U|2180
5GAF|1|A|U|2181
5GAF|1|A|U|2182
5GAF|1|A|A|2183

Current chains

Chain A

23S ribosomal RNA

Nearby chains