IL_5GAF_128

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

5GAF|1|A|A|2126, 5GAF|1|A|C|2161, 5GAF|1|A|C|2164, 5GAF|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAF_128 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.1355

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5GAF|1|A|G|2123
5GAF|1|A|G|2124
5GAF|1|A|G|2125
5GAF|1|A|A|2126
5GAF|1|A|G|2127
5GAF|1|A|G|2128
*
5GAF|1|A|C|2160
5GAF|1|A|C|2161
5GAF|1|A|G|2162
5GAF|1|A|A|2163
5GAF|1|A|C|2164
5GAF|1|A|C|2165
5GAF|1|A|U|2166
5GAF|1|A|U|2167
5GAF|1|A|G|2168
5GAF|1|A|A|2169
5GAF|1|A|A|2170
5GAF|1|A|A|2171
5GAF|1|A|U|2172
5GAF|1|A|A|2173
5GAF|1|A|C|2174
5GAF|1|A|C|2175

Current chains

Chain A

23S ribosomal RNA

Nearby chains