IL_5GAG_001

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUU*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_001 not in the Motif Atlas

Geometric match to IL_8GLP_152

Geometric discrepancy: 0.2103

The information below is about IL_8GLP_152

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

5GAG|1|1|G|35
5GAG|1|1|U|36
5GAG|1|1|U|37
*
5GAG|1|1|G|69
5GAG|1|1|G|70
5GAG|1|1|C|71

Current chains

Chain 1

SRP 4.5S RNA

Nearby chains

Chain b

50S ribosomal protein L32

Chain i

Signal recognition particle protein Ffh