IL_5GAG_009
3D structure
- PDB id
- 5GAG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNC in complex with SRP-SR in the closed state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAG_009 not in the Motif Atlas
- Homologous match to IL_5J7L_250
- Geometric discrepancy: 0.0755
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5GAG|1|A|G|188
5GAG|1|A|G|189
5GAG|1|A|A|190
5GAG|1|A|A|191
5GAG|1|A|C|192
5GAG|1|A|U|193
5GAG|1|A|G|194
*
5GAG|1|A|C|201
5GAG|1|A|U|202
5GAG|1|A|A|203
5GAG|1|A|A|204
5GAG|1|A|G|205
5GAG|1|A|U|206
5GAG|1|A|A|207
5GAG|1|A|C|208
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L15
- Chain Y
- 50S ribosomal protein L28
- Chain e
- 50S ribosomal protein L35
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