IL_5GAG_020

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

5GAG|1|A|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_020 not in the Motif Atlas

Geometric match to IL_5J7L_261

Geometric discrepancy: 0.0931

The information below is about IL_5J7L_261

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5GAG|1|A|G|697
5GAG|1|A|C|698
*
5GAG|1|A|G|763
5GAG|1|A|A|764
5GAG|1|A|C|765

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2