IL_5GAG_024

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

5GAG|1|A|G|776, 5GAG|1|A|A|788, 5GAG|1|A|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_024 not in the Motif Atlas

Geometric match to IL_7RQB_023

Geometric discrepancy: 0.1099

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

5GAG|1|A|G|775
5GAG|1|A|G|776
5GAG|1|A|G|777
*
5GAG|1|A|C|787
5GAG|1|A|A|788
5GAG|1|A|A|789
5GAG|1|A|U|790
5GAG|1|A|C|791

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain T

50S ribosomal protein L22

Chain d

50S ribosomal protein L34