IL_5GAG_033

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_033 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.1597

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5GAG|1|A|G|875
5GAG|1|A|C|876
5GAG|1|A|A|877
5GAG|1|A|A|878
5GAG|1|A|G|879
*
5GAG|1|A|C|898
5GAG|1|A|A|899
5GAG|1|A|A|900
5GAG|1|A|C|901
5GAG|1|A|C|902

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16