3D structure

PDB id
5GAG (explore in PDB, NAKB, or RNA 3D Hub)
Description
RNC in complex with SRP-SR in the closed state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
5GAG|1|A|A|1127, 5GAG|1|A|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5GAG_040 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0677
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

5GAG|1|A|G|1024
5GAG|1|A|G|1025
5GAG|1|A|G|1026
5GAG|1|A|A|1027
5GAG|1|A|A|1028
5GAG|1|A|A|1029
5GAG|1|A|C|1030
*
5GAG|1|A|G|1124
5GAG|1|A|G|1125
5GAG|1|A|A|1126
5GAG|1|A|A|1127
5GAG|1|A|G|1128
5GAG|1|A|A|1129
5GAG|1|A|U|1130
5GAG|1|A|G|1131
5GAG|1|A|U|1132
5GAG|1|A|A|1133
5GAG|1|A|A|1134
5GAG|1|A|C|1135
5GAG|1|A|G|1136
5GAG|1|A|G|1137
5GAG|1|A|G|1138
5GAG|1|A|G|1139
5GAG|1|A|C|1140

Current chains

Chain A
23S rRNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain D
50S ribosomal protein L3
Chain K
50S ribosomal protein L13
Chain N
50S ribosomal protein L16
Chain f
50S ribosomal protein L36

Coloring options:


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