IL_5GAG_050

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_050 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0838

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5GAG|1|A|A|1262
5GAG|1|A|U|1263
5GAG|1|A|A|1264
5GAG|1|A|A|1265
5GAG|1|A|G|1266
5GAG|1|A|U|1267
5GAG|1|A|A|1268
5GAG|1|A|A|1269
*
5GAG|1|A|U|2011
5GAG|1|A|G|2012
5GAG|1|A|A|2013
5GAG|1|A|A|2014
5GAG|1|A|A|2015
5GAG|1|A|U|2016
5GAG|1|A|U|2017

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32