IL_5GAG_070

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

5GAG|1|A|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_070 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.0941

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5GAG|1|A|U|1712
5GAG|1|A|A|1713
5GAG|1|A|U|1714
5GAG|1|A|G|1715
5GAG|1|A|U|1716
5GAG|1|A|A|1717
5GAG|1|A|G|1718
*
5GAG|1|A|U|1742
5GAG|1|A|G|1743
5GAG|1|A|A|1744
5GAG|1|A|A|1745
5GAG|1|A|A|1746

Current chains

Chain A

23S rRNA

Nearby chains