IL_5GAG_080

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

5GAG|1|A|A|1938, 5GAG|1|A|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_080 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.1438

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

5GAG|1|A|C|1934
5GAG|1|A|G|1935
5GAG|1|A|A|1936
5GAG|1|A|A|1937
5GAG|1|A|A|1938
5GAG|1|A|U|1939
5GAG|1|A|U|1940
5GAG|1|A|C|1941
5GAG|1|A|C|1942
5GAG|1|A|U|1943
5GAG|1|A|U|1944
5GAG|1|A|G|1945
*
5GAG|1|A|C|1961
5GAG|1|A|C|1962
5GAG|1|A|U|1963
5GAG|1|A|G|1964

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2