IL_5GAG_088

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUGUGUAGGAUAGGUG*CACCCUUUA

Length

27 nucleotides

Bulged bases

5GAG|1|A|U|2111, 5GAG|1|A|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_088 not in the Motif Atlas

Homologous match to IL_5J7L_328

Geometric discrepancy: 0.5468

The information below is about IL_5J7L_328

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20245.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

5GAG|1|A|U|2106
5GAG|1|A|G|2107
5GAG|1|A|A|2108
5GAG|1|A|U|2109
5GAG|1|A|G|2110
5GAG|1|A|U|2111
5GAG|1|A|G|2112
5GAG|1|A|U|2113
5GAG|1|A|A|2114
5GAG|1|A|G|2115
5GAG|1|A|G|2116
5GAG|1|A|A|2117
5GAG|1|A|U|2118
5GAG|1|A|A|2119
5GAG|1|A|G|2120
5GAG|1|A|G|2121
5GAG|1|A|U|2122
5GAG|1|A|G|2123
*
5GAG|1|A|C|2175
5GAG|1|A|A|2176
5GAG|1|A|C|2177
5GAG|1|A|C|2178
5GAG|1|A|C|2179
5GAG|1|A|U|2180
5GAG|1|A|U|2181
5GAG|1|A|U|2182
5GAG|1|A|A|2183

Current chains

Chain A

23S rRNA

Nearby chains