IL_5GAG_089

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

5GAG|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_089 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.1321

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5GAG|1|A|G|2123
5GAG|1|A|G|2124
5GAG|1|A|G|2125
5GAG|1|A|A|2126
5GAG|1|A|G|2127
5GAG|1|A|G|2128
*
5GAG|1|A|C|2160
5GAG|1|A|C|2161
5GAG|1|A|G|2162
5GAG|1|A|A|2163
5GAG|1|A|C|2164
5GAG|1|A|C|2165
5GAG|1|A|U|2166
5GAG|1|A|U|2167
5GAG|1|A|G|2168
5GAG|1|A|A|2169
5GAG|1|A|A|2170
5GAG|1|A|A|2171
5GAG|1|A|U|2172
5GAG|1|A|A|2173
5GAG|1|A|C|2174
5GAG|1|A|C|2175

Current chains

Chain A

23S rRNA

Nearby chains