IL_5GAG_090

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5GAG|1|A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_090 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.2203

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5GAG|1|A|C|2129
5GAG|1|A|U|2130
5GAG|1|A|U|2131
5GAG|1|A|U|2132
5GAG|1|A|G|2133
5GAG|1|A|A|2134
5GAG|1|A|A|2135
5GAG|1|A|G|2136
*
5GAG|1|A|U|2155
5GAG|1|A|G|2156
5GAG|1|A|G|2157
5GAG|1|A|A|2158
5GAG|1|A|G|2159

Current chains

Chain A

23S rRNA

Nearby chains